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Package integIRTy
Type Package
LazyData true
Title Integrating Multiple Modalities of High Throughput Assays Using Item Response Theory
Version 1.0.5
Date 2017-07-11
Author Pan Tong, Kevin R Coombes
Maintainer Kevin R. Coombes <krc@silicovore.com>
Description Provides a systematic framework for integrating multiple modalities of assays profiled on the same set of samples. The goal is to identify genes that are altered in cancer either marginally or consistently across different assays. The heterogeneity among different platforms and different samples are automatically adjusted so that the overall alteration magnitude can be accurately inferred. See Tong and Coombes (2012) <doi:10.1093/bioinformatics/bts561>.
License Apache License (== 2.0)
Depends ltm, foreach, doParallel
Imports mclust, MASS, abind
Suggests KernSmooth
URL http://oompa.r-forge.r-project.org/
NeedsCompilation no
Packaged 2017-08-04 14:16:57 UTC; coom05
Built R 3.4.0; ; 2017-08-04 14:17:36 UTC; windows
User ManualintegIRTy-manual.pdf
R CHECK00check.log
Vignettes integIRTy.pdf